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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6340997_6341469_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6340997 - 6341469
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
RPLFRKLRKRTLPADIKESI
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.4
38.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
80.3
0.68
0.8
74
30.3
Minor 5ss
28.6
-2.5
2.7
27.3
36.3
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003387
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046945
6330642 - 6347588
16947
ENSAPLT00000041047
6330642 - 6347588
16947
ENSAPLT00000003486
6321811 - 6347588
25778