About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63413934_63426367_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63413934 - 63426367
Intron Length:
12434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
GTTATATGAACT
Flanking Amino Acid:
RKHPYSYCQYESTRHQPNRI
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
72.9
36.6
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
84.5
0.78
0.8
81.2
36.5
Minor 5ss
35.2
-1.7
2.9
46.3
41.5
Minor BPS
54.5
0.22
1.8
75.86
39.9

Associated Gene:

Gene:
ADIPOR2
Ensembl Gene ID:
ENSAPLG00000005683
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021987
63413876 - 63446952
33077