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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63426604_63439235_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63426604 - 63439235
Intron Length:
12632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TTTTCCTAAAAG
Flanking Amino Acid:
EPPLSSDQENSSEDNNHNDE
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
28.7
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
84.4
0.77
0.7
77.3
31.4
Minor 5ss
45.3
-0.5
2.8
64.3
39.9
Minor BPS
68.4
0.44
1.8
76.73
40.6

Associated Gene:

Gene:
ADIPOR2
Ensembl Gene ID:
ENSAPLG00000005683
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033408
63426368 - 63446952
20585
ENSAPLT00000021987
63413876 - 63446952
33077
ENSAPLT00000005893
63422746 - 63446952
24207