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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63439356_63440305_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63439356 - 63440305
Intron Length:
950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCAAACTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTCAAACT
Flanking Amino Acid:
MERMEEFVCKCCRILQAPSC
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
77.9
31.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
69.7
0.44
0.9
68.4
36.5
Minor 5ss
30.5
-2.2
3.5
41.8
45.1
Minor BPS
58
0.33
2
83.74
37.5

Associated Gene:

Gene:
ADIPOR2
Ensembl Gene ID:
ENSAPLG00000005683
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033408
63426368 - 63446952
20585