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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63440384_63441218_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63440384 - 63441218
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
TTCCCTCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTGTATTTAATC
Flanking Amino Acid:
NPTNTAETTPVWEGRWRVIP
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
68
38.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.5
0.62
0.7
70
30.9
Minor 5ss
33.8
-1.8
3
41.7
45.1
Minor BPS
61.9
0.35
1.5
66.55
39.9

Associated Gene:

Gene:
ADIPOR2
Ensembl Gene ID:
ENSAPLG00000005683
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033408
63426368 - 63446952
20585