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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63442217_63443297_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63442217 - 63443297
Intron Length:
1081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TTCCTGTCAAAC
Flanking Amino Acid:
HSEGVSRLFSKLDYSGIALL
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
77.6
32.3
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
82
0.72
0.8
74.3
36.5
Minor 5ss
35.7
-1.6
3.2
45.3
36.6
Minor BPS
43.6
-0.5
2.2
56.83
41.6

Associated Gene:

Gene:
ADIPOR2
Ensembl Gene ID:
ENSAPLG00000005683
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033408
63426368 - 63446952
20585
ENSAPLT00000021987
63413876 - 63446952
33077
ENSAPLT00000005893
63422746 - 63446952
24207