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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63484800_63486162_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
63484800 - 63486162
Intron Length:
1363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAA
U12 Branch Point Sequence:
TGAATCCCACCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
58.2
0.2
1.1
49.1
38
Major PPT
78.8
0.65
0.7
69.6
31.2
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
40.4
-0.7
2
49.76
39.9

Associated Gene:

Gene:
LRTM2
Ensembl Gene ID:
ENSAPLG00000005674
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005857
63484669 - 63492373
7705