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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63486326_63489958_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63486326 - 63489958
Intron Length:
3633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTCACCCAGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGCTTTTCACCC
Flanking Amino Acid:
RFLMRWQEACLLGCWLSLCA
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.3
72.7
38.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
72.7
0.51
0.9
67.8
33.2
Minor 5ss
37.9
-1.4
2.8
50.4
39.3
Minor BPS
47.8
-0.1
1.8
58.24
41.2

Associated Gene:

Gene:
LRTM2
Ensembl Gene ID:
ENSAPLG00000005674
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005857
63484669 - 63492373
7705