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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63526978_63529056_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
63526978 - 63529056
Intron Length:
2079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATAAGGT
5'SS Class:
major
3'SS Sequence:
AGCCACTACACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
AGCCACTACACA
Flanking Amino Acid:
PLRELLKLAPRGASTGCPRL
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.1
56.2
41.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
58
0.18
1
50
37.5
Minor 5ss
38.1
-1.3
3.5
55.6
48.7
Minor BPS
41.2
-0.7
2.1
48.86
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005111
63526752 - 63563282
36531