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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63529131_63530203_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63529131 - 63530203
Intron Length:
1073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGCTTCTGAAAA
Flanking Amino Acid:
MPVFSKKNETRSHGILLGVV
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.3
34.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
76.6
0.6
1
74.9
39
Minor 5ss
30.4
-2.2
3.2
42.4
44.3
Minor BPS
57.7
0.24
1.6
66.07
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005111
63526752 - 63563282
36531