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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63534983_63536010_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63534983 - 63536010
Intron Length:
1028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTCTG
5'SS Class:
major
3'SS Sequence:
TTCTTGTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TACCTTTGCATT
Flanking Amino Acid:
FEKYNWPDRKVRVFTYLIGR
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
66.5
44.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
83.3
0.75
0.8
76.1
37.8
Minor 5ss
40.3
-1.1
2.7
50.3
46
Minor BPS
43.8
-0.4
1.7
58.41
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005111
63526752 - 63563282
36531