About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63536125_63545077_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63536125 - 63545077
Intron Length:
8953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
ACTCTGCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TGCTCTTCCACT
Flanking Amino Acid:
LTESFKILREFRDAGQGGLC
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
76.6
0.6
0.9
69.4
36.2
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
51.7
0.13
2
72.55
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005111
63526752 - 63563282
36531