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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63545168_63546283_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63545168 - 63546283
Intron Length:
1116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCACTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GTCTTCTCACTA
Flanking Amino Acid:
LVQADRDNREHFKQLVDELQ
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
84
26.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
80.1
0.68
0.8
73.5
30
Minor 5ss
31.6
-2.1
2.6
37.4
40
Minor BPS
48.6
-0.1
1.8
59.42
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005111
63526752 - 63563282
36531