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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63548673_63549148_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63548673 - 63549148
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
ACGTGCTGATTG
Flanking Amino Acid:
SSTGFFRLYPGIKWLPDENG
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
75.6
0.58
0.8
73.2
31.7
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
41.5
-0.7
2
41.94
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005111
63526752 - 63563282
36531