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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63553327_63554831_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63553327 - 63554831
Intron Length:
1505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGACCA
5'SS Class:
major
3'SS Sequence:
CTGTTTGCATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTTTCTTTATCT
Flanking Amino Acid:
MLRRKVEAVERLVEAAEDAD
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.5
40.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
67.1
0.39
1
67
39.2
Minor 5ss
31.2
-2.2
3.2
40.4
45.2
Minor BPS
73.3
0.81
1.6
87.39
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005111
63526752 - 63563282
36531