Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63554949_63561286_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

63554949 - 63561286

Intron Length:

6338

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGCGAC

5'SS Class:

major

3'SS Sequence:

TTCCCTTGGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAG

U12 Branch Point Sequence:

TCCTGCTCAGCA

Flanking Amino Acid:

KYSGSLLLQKKYKDVEPTLK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

66.7

39.6

Major BPS

55.8

0.14

1.6

65.3

43.7

Major PPT

70.2

0.46

68.3

37.4

Minor 5ss

35.2

-1.7

3.6

48.7

47.8

Minor BPS

46.2

-0.2

2.2

59.11

46.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004925

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005111

63526752 - 63563282

36531