Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63561423_63563199_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

63561423 - 63563199

Intron Length:

1777

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTGGAGTAG

5'SS Class:

weak_major

3'SS Sequence:

TTACTGTCTGAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAC

U12 Branch Point Sequence:

AGCTTCATACTT

Flanking Amino Acid:

SEPNIPESSTISRQSYCLCI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.7

0.09

1.1

48.9

Major BPS

71.4

0.53

1.2

63.4

Major PPT

67.7

0.4

1.1

37.6

Minor 5ss

-2.2

3.6

40.2

46.6

Minor BPS

47.3

-0.1

1.8

63.24

41.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004925

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005111

63526752 - 63563282

36531