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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63582286_63584137_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63582286 - 63584137
Intron Length:
1852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAACAAT
U12 Branch Point Sequence:
CTTGCAGTAACA
Flanking Amino Acid:
LQETLLHLIQNDDNFLNIIY
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
57.4
0.18
1.3
65.4
38
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
48.6
-0.1
2.3
68.02
44.4

Associated Gene:

Gene:
DCP1B
Ensembl Gene ID:
ENSAPLG00000004762
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004920
63582205 - 63623928
41724