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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63584381_63590007_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63584381 - 63590007
Intron Length:
5627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTATATGGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GATTACTTGATT
Flanking Amino Acid:
VTEKQNSLFQVISPQRIPAT
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84
30.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
68.8
0.42
1.1
65.4
44.6
Minor 5ss
39.5
-1.2
2.8
48.7
47.5
Minor BPS
65.9
0.58
1.5
78
38

Associated Gene:

Gene:
DCP1B
Ensembl Gene ID:
ENSAPLG00000004762
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004920
63582205 - 63623928
41724