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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63590848_63591595_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63590848 - 63591595
Intron Length:
748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
CTATGTTTACTT
Flanking Amino Acid:
QHQRVSQQSKNVDPEPQHLS
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.8
39.1
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
75.6
0.58
0.8
68.7
31.7
Minor 5ss
37.8
-1.4
3.5
55.9
48.3
Minor BPS
48.8
-0
2
67.65
44.2

Associated Gene:

Gene:
DCP1B
Ensembl Gene ID:
ENSAPLG00000004762
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004920
63582205 - 63623928
41724