About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63591725_63598726_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63591725 - 63598726
Intron Length:
7002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TCGTACTTAACT
Flanking Amino Acid:
LTKAKDEYTKCKTCSEPKQI
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
89.9
0.9
0.7
88.4
28.7
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
75
0.86
1.5
84.88
41.6

Associated Gene:

Gene:
DCP1B
Ensembl Gene ID:
ENSAPLG00000004762
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004920
63582205 - 63623928
41724