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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63598863_63601123_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63598863 - 63601123
Intron Length:
2261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTACTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTATAT
U12 Branch Point Sequence:
TGTCTCCTACTT
Flanking Amino Acid:
ECQRIAELMKNLTQQEQFKA
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
26.3
Major BPS
64.1
0.35
1.2
61
45.5
Major PPT
80.3
0.68
0.8
77
30.5
Minor 5ss
36.1
-1.6
3.3
49.4
41.3
Minor BPS
48.5
-0
1.9
70.49
40.6

Associated Gene:

Gene:
DCP1B
Ensembl Gene ID:
ENSAPLG00000004762
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004920
63582205 - 63623928
41724