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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63623170_63623775_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63623170 - 63623775
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACGTCGG
5'SS Class:
major
3'SS Sequence:
TCTTTTTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTGTCTTCAACT
Flanking Amino Acid:
YTFGHRANEWEKTDVEGTLF
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
54.7
49.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
88
0.85
0.8
87.9
29.4
Minor 5ss
32.1
-2
3
32.4
42.2
Minor BPS
67.5
0.63
1.6
79.76
42.7

Associated Gene:

Gene:
DCP1B
Ensembl Gene ID:
ENSAPLG00000004762
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004920
63582205 - 63623928
41724