About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63680633_63684074_F

Intron Information:

Intron Rank:
2
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
63680633 - 63684074
Intron Length:
3442

Sequence Information:

Terminal Dinucleotides:
AT-AG
5'SS Sequence:
GAA|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CTCCATTCCTCAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
ATTTCCTTAACT
Flanking Amino Acid:
RRACISIVEWKPFEIIILLT
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
34.5
-0.9
3.4
56
43.9
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
75
0.56
0.8
72.4
31.9
Minor 5ss
99.7
1.65
0.6
98.9
3.35
Minor BPS
95.5
1.51
0.6
102.8
20

Associated Gene:

Gene:
CACNA1C
Ensembl Gene ID:
ENSAPLG00000004725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019043
63652284 - 64080502
428219
ENSAPLT00000004870
63652284 - 64080502
428219
ENSAPLT00000044963
63652284 - 64080502
428219
ENSAPLT00000035215
63652284 - 64080502
428219