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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6376946_6380049_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6376946 - 6380049
Intron Length:
3104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
CGTGGTGTAACC
Flanking Amino Acid:
KFSVEVHDPRRASVTRRTFG
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
80
0.67
0.7
73.7
31.4
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
42.7
-0.5
2.4
53.83
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023557
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032618
6369123 - 6526339
157217