Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63883241_63891262_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

63883241 - 63891262

Intron Length:

8022

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGTACC

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCCTAC

U12 Branch Point Sequence:

TTTCTTTTTACA

Flanking Amino Acid:

NLLDFIIVVVGLFSAILEQA

Intron Amino Acid Position:

206

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

74.9

35.3

Major BPS

47.5

-0.1

1.3

44.1

40.5

Major PPT

95.3

1.02

0.5

91.2

20.6

Minor 5ss

31.1

-2.2

2.6

35.1

Minor BPS

63.5

0.42

1.6

76.13

34.5

Associated Gene:

Gene:

CACNA1C

Ensembl Gene ID:

ENSAPLG00000004725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004870

63652284 - 64080502

428219

ENSAPLT00000044963

63652284 - 64080502

428219

ENSAPLT00000035215

63652284 - 64080502

428219

ENSAPLT00000019043

63652284 - 64080502

428219