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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6393286_6395078_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6393286 - 6395078
Intron Length:
1793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTCAGTATAACT
Flanking Amino Acid:
TYGVHYYAVKDKQGIPWWLG
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
79
35.1
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
34.3
-1.8
3.4
50.5
46
Minor BPS
49.4
0.03
2.1
73.23
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023557
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032618
6369123 - 6526339
157217