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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63942354_63966054_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63942354 - 63966054
Intron Length:
23701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGCAAT
5'SS Class:
major
3'SS Sequence:
TTGACTCTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TTCCCTTTGACT
Flanking Amino Acid:
EGMDEEKPRNMSMPTSETES
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
72
39.5
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
79.5
0.66
0.9
72.8
37.4
Minor 5ss
43.2
-0.7
3
63.3
42
Minor BPS
73.8
0.83
1.2
84.52
36.2

Associated Gene:

Gene:
CACNA1C
Ensembl Gene ID:
ENSAPLG00000004725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044963
63652284 - 64080502
428219
ENSAPLT00000035215
63652284 - 64080502
428219
ENSAPLT00000019043
63652284 - 64080502
428219
ENSAPLT00000004870
63652284 - 64080502
428219