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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63974711_63976814_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63974711 - 63976814
Intron Length:
2104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTAATTTTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTTTTCTAATT
Flanking Amino Acid:
LAHRISKSKFSRYWRRWNRF
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
69.6
0.44
1.1
67.5
42.5
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
63
0.49
1.6
79.49
37.4

Associated Gene:

Gene:
CACNA1C
Ensembl Gene ID:
ENSAPLG00000004725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035215
63652284 - 64080502
428219
ENSAPLT00000019043
63652284 - 64080502
428219
ENSAPLT00000004870
63652284 - 64080502
428219
ENSAPLT00000044963
63652284 - 64080502
428219