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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63988583_63988699_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
63988583 - 63988699
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGCTGC
5'SS Class:
weak_major
3'SS Sequence:
CTGTTTCTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAA
U12 Branch Point Sequence:
TGTCTGATAAAG
Flanking Amino Acid:
ADGESPPATKINMDDYQPNE
Intron Amino Acid Position:
822

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.3
56.7
43.5
Major BPS
63.5
0.33
1.2
64.3
39.6
Major PPT
72.6
0.51
1
73.6
37
Minor 5ss
45.7
-0.5
2.6
59.7
44.9
Minor BPS
41.9
-0.7
2.3
51.72
42.1

Associated Gene:

Gene:
CACNA1C
Ensembl Gene ID:
ENSAPLG00000004725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004870
63652284 - 64080502
428219
ENSAPLT00000044963
63652284 - 64080502
428219
ENSAPLT00000035215
63652284 - 64080502
428219
ENSAPLT00000019043
63652284 - 64080502
428219