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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63988770_63995866_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63988770 - 63995866
Intron Length:
7097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTCTC
5'SS Class:
major
3'SS Sequence:
ATGTTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TATGAAATAAAA
Flanking Amino Acid:
KSPYPTTEAPAEEDEEEPEM
Intron Amino Acid Position:
845

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.2
68.8
42.3
Major BPS
62
0.3
1
62.3
30.4
Major PPT
83.3
0.75
0.8
77.8
36
Minor 5ss
51.5
0.05
2.4
70.5
39.9
Minor BPS
42.7
-0.5
2.1
57.65
40.6

Associated Gene:

Gene:
CACNA1C
Ensembl Gene ID:
ENSAPLG00000004725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035215
63652284 - 64080502
428219
ENSAPLT00000019043
63652284 - 64080502
428219
ENSAPLT00000004870
63652284 - 64080502
428219
ENSAPLT00000044963
63652284 - 64080502
428219