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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63997452_64001103_F

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
63997452 - 64001103
Intron Length:
3652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGCTTA
5'SS Class:
weak_major
3'SS Sequence:
TTTGTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
PVRHLSFRNQILFYFDIVFT
Intron Amino Acid Position:
933

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1
70.4
36.3
Major BPS
71.2
0.53
1
61
37.5
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
68.3
0.62
2.1
72.8
38.3
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
CACNA1C
Ensembl Gene ID:
ENSAPLG00000004725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044963
63652284 - 64080502
428219
ENSAPLT00000035215
63652284 - 64080502
428219
ENSAPLT00000019043
63652284 - 64080502
428219
ENSAPLT00000004870
63652284 - 64080502
428219