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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64006737_64007421_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64006737 - 64007421
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
TTCCTCTTCAAG
Flanking Amino Acid:
FACIGVQLFKGKLYSCTDSS
Intron Amino Acid Position:
1054

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
67.7
37.5
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
73.5
0.53
1
71.4
33.4
Minor 5ss
31.6
-2.1
3.1
40.3
45.3
Minor BPS
48.3
-0.2
1.9
57.38
44.1

Associated Gene:

Gene:
CACNA1C
Ensembl Gene ID:
ENSAPLG00000004725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019043
63652284 - 64080502
428219
ENSAPLT00000004870
63652284 - 64080502
428219
ENSAPLT00000044963
63652284 - 64080502
428219
ENSAPLT00000035215
63652284 - 64080502
428219