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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64007475_64007581_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64007475 - 64007581
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCACCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCACAT
U12 Branch Point Sequence:
AGTTCTGTCACA
Flanking Amino Acid:
DSSKQTAAECRGYYITYKDG
Intron Amino Acid Position:
1071

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
71.4
40.3
Major BPS
59.9
0.25
1.2
69
38.9
Major PPT
72.5
0.51
0.8
65.5
29.2
Minor 5ss
29.1
-2.4
2.7
33
41.9
Minor BPS
48
-0.1
2.3
66
40.8

Associated Gene:

Gene:
CACNA1C
Ensembl Gene ID:
ENSAPLG00000004725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019043
63652284 - 64080502
428219
ENSAPLT00000004870
63652284 - 64080502
428219
ENSAPLT00000044963
63652284 - 64080502
428219
ENSAPLT00000035215
63652284 - 64080502
428219