About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64008710_64009141_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64008710 - 64009141
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTAC
5'SS Class:
strong_major
3'SS Sequence:
GCCTCTTTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GATTTTTAAACT
Flanking Amino Acid:
YKNCELDKNQRQCVEYALKA
Intron Amino Acid Position:
1188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
80.3
28.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.8
0.6
0.8
70.9
33.3
Minor 5ss
40.6
-1.1
2.8
52.6
44.6
Minor BPS
62.7
0.48
1.6
77.16
39.5

Associated Gene:

Gene:
CACNA1C
Ensembl Gene ID:
ENSAPLG00000004725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035215
63652284 - 64080502
428219
ENSAPLT00000019043
63652284 - 64080502
428219
ENSAPLT00000004870
63652284 - 64080502
428219
ENSAPLT00000044963
63652284 - 64080502
428219