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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64011603_64029239_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64011603 - 64029239
Intron Length:
17637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTGCCACATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCACAT
U12 Branch Point Sequence:
TTCTCTGCCACA
Flanking Amino Acid:
VLKLIAFKPKHYFCDAWNTF
Intron Amino Acid Position:
1278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
48.9
-0
1.2
56.9
40.5
Major PPT
66.1
0.36
1
59
36.2
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
43.8
-0.4
2.5
62.68
44.2

Associated Gene:

Gene:
CACNA1C
Ensembl Gene ID:
ENSAPLG00000004725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035215
63652284 - 64080502
428219
ENSAPLT00000019043
63652284 - 64080502
428219
ENSAPLT00000004870
63652284 - 64080502
428219
ENSAPLT00000044963
63652284 - 64080502
428219