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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64052284_64055861_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64052284 - 64055861
Intron Length:
3578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCCTT
5'SS Class:
major
3'SS Sequence:
TTTTCGTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGAGAC
U12 Branch Point Sequence:
TTGGTGGAGACA
Flanking Amino Acid:
LLWTFIKSFQALPYVALLIV
Intron Amino Acid Position:
1360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
67.2
43.7
Major BPS
45.6
-0.2
1.2
38.1
41.7
Major PPT
84.5
0.78
0.8
77.4
36.9
Minor 5ss
50
0
2.8
74.1
42.3
Minor BPS
34.5
-1.2
2.6
48.38
43.2

Associated Gene:

Gene:
CACNA1C
Ensembl Gene ID:
ENSAPLG00000004725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035215
63652284 - 64080502
428219
ENSAPLT00000019043
63652284 - 64080502
428219
ENSAPLT00000004870
63652284 - 64080502
428219
ENSAPLT00000044963
63652284 - 64080502
428219