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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64055928_64059407_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64055928 - 64059407
Intron Length:
3480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
CTAACCTGAAAA
Flanking Amino Acid:
FFIYAVIGMQVFGKIALNDT
Intron Amino Acid Position:
1382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
75
0.56
1
69.2
41.8
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
54.7
0.14
1.6
63.75
41.7

Associated Gene:

Gene:
CACNA1C
Ensembl Gene ID:
ENSAPLG00000004725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035215
63652284 - 64080502
428219
ENSAPLT00000019043
63652284 - 64080502
428219
ENSAPLT00000004870
63652284 - 64080502
428219
ENSAPLT00000044963
63652284 - 64080502
428219