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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64060479_64061354_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64060479 - 64061354
Intron Length:
876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCATCTTTATCC
Flanking Amino Acid:
ISFYMLCAFLIINLFVAVIM
Intron Amino Acid Position:
1468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
69.4
36.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84.7
0.78
0.8
79.6
32.4
Minor 5ss
29.2
-2.4
2.7
30.5
36.3
Minor BPS
65.1
0.45
1.6
70.76
40.9

Associated Gene:

Gene:
CACNA1C
Ensembl Gene ID:
ENSAPLG00000004725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004870
63652284 - 64080502
428219
ENSAPLT00000044963
63652284 - 64080502
428219
ENSAPLT00000035215
63652284 - 64080502
428219
ENSAPLT00000019043
63652284 - 64080502
428219