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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64063226_64064511_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64063226 - 64064511
Intron Length:
1286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGCAC
5'SS Class:
major
3'SS Sequence:
CCTTACTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
TCCTCCTTACTC
Flanking Amino Acid:
KLCPHRVACKRLVSMNMPLN
Intron Amino Acid Position:
1543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
66.8
38.9
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
74.9
0.56
0.8
68.3
31.7
Minor 5ss
32.8
-2
3.3
42.1
39
Minor BPS
64.9
0.45
1.6
69.44
42.9

Associated Gene:

Gene:
CACNA1C
Ensembl Gene ID:
ENSAPLG00000004725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035215
63652284 - 64080502
428219
ENSAPLT00000019043
63652284 - 64080502
428219
ENSAPLT00000004870
63652284 - 64080502
428219
ENSAPLT00000044963
63652284 - 64080502
428219