Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64064615_64066365_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

64064615 - 64066365

Intron Length:

1751

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACAAGC

5'SS Class:

major

3'SS Sequence:

TTTCACCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAC

U12 Branch Point Sequence:

TCTGGCTTAATT

Flanking Amino Acid:

VRTALRIKTEGNLEQANEEL

Intron Amino Acid Position:

1577

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

1.1

69.9

41.1

Major BPS

90.1

0.99

0.7

91.6

20.3

Major PPT

80.9

0.69

0.8

74.3

30.4

Minor 5ss

39.4

-1.2

2.9

52.8

43.9

Minor BPS

63.3

0.49

1.9

79.08

43.9

Associated Gene:

Gene:

CACNA1C

Ensembl Gene ID:

ENSAPLG00000004725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035215

63652284 - 64080502

428219

ENSAPLT00000019043

63652284 - 64080502

428219

ENSAPLT00000004870

63652284 - 64080502

428219

ENSAPLT00000044963

63652284 - 64080502

428219