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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64066468_64067861_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64066468 - 64067861
Intron Length:
1394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TACCCCTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
TTTTTGTTACCC
Flanking Amino Acid:
LLDQVVPPAGDDEVTVGKFY
Intron Amino Acid Position:
1611

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
78.2
0.63
0.8
69
36.6
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
57.1
0.2
2.3
77.35
39.1

Associated Gene:

Gene:
CACNA1C
Ensembl Gene ID:
ENSAPLG00000004725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035215
63652284 - 64080502
428219
ENSAPLT00000019043
63652284 - 64080502
428219
ENSAPLT00000004870
63652284 - 64080502
428219
ENSAPLT00000044963
63652284 - 64080502
428219