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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64067990_64069084_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64067990 - 64069084
Intron Length:
1095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACAGAT
5'SS Class:
major
3'SS Sequence:
TGAAGCTCTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTCACATAACC
Flanking Amino Acid:
PSQRNALSLQFAVLQAGLRT
Intron Amino Acid Position:
1654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
71.2
34.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
62.7
0.29
1
54.6
41.2
Minor 5ss
32.2
-2
3.5
46.6
48.7
Minor BPS
56.3
0.18
1.8
70.35
40.5

Associated Gene:

Gene:
CACNA1C
Ensembl Gene ID:
ENSAPLG00000004725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004870
63652284 - 64080502
428219
ENSAPLT00000044963
63652284 - 64080502
428219
ENSAPLT00000035215
63652284 - 64080502
428219
ENSAPLT00000019043
63652284 - 64080502
428219