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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64070595_64072901_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64070595 - 64072901
Intron Length:
2307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTCATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TGTATTTTGACT
Flanking Amino Acid:
QEAPWKLPSKSSSSRDSQLA
Intron Amino Acid Position:
1821

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73.2
39.3
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
75.6
0.58
0.9
75.5
34.3
Minor 5ss
44.2
-0.6
2.9
59.3
45.5
Minor BPS
67.1
0.62
1.2
79.98
35.8

Associated Gene:

Gene:
CACNA1C
Ensembl Gene ID:
ENSAPLG00000004725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019043
63652284 - 64080502
428219