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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64078283_64078488_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64078283 - 64078488
Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGCCA
5'SS Class:
major
3'SS Sequence:
CCTCCTTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
CTCCTTTTGAAG
Flanking Amino Acid:
HGSAGSLVEAVLISEGLMQF
Intron Amino Acid Position:
2001

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
63.6
42.4
Major BPS
61.1
0.28
1
67
29.8
Major PPT
73.2
0.52
1
74.1
28.2
Minor 5ss
31.5
-2.1
3.3
40.8
45
Minor BPS
47.1
-0.3
1.5
47.78
40

Associated Gene:

Gene:
CACNA1C
Ensembl Gene ID:
ENSAPLG00000004725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044963
63652284 - 64080502
428219
ENSAPLT00000035215
63652284 - 64080502
428219
ENSAPLT00000019043
63652284 - 64080502
428219
ENSAPLT00000004870
63652284 - 64080502
428219