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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64078622_64078850_F

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64078622 - 64078850
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACAGCA
5'SS Class:
major
3'SS Sequence:
GGGTTTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTGTTTCAATG
Flanking Amino Acid:
MENAADNILNEVPHCSRDLE
Intron Amino Acid Position:
2045

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.2
61.4
37.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.1
0.52
1
69.2
46.1
Minor 5ss
36.4
-1.5
3.3
45.3
44.6
Minor BPS
53.9
-0
1.7
62.38
40.7

Associated Gene:

Gene:
CACNA1C
Ensembl Gene ID:
ENSAPLG00000004725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035215
63652284 - 64080502
428219
ENSAPLT00000019043
63652284 - 64080502
428219
ENSAPLT00000004870
63652284 - 64080502
428219
ENSAPLT00000044963
63652284 - 64080502
428219