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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6408218_6410845_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6408218 - 6410845
Intron Length:
2628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CCTCATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GATGACTTAACT
Flanking Amino Acid:
VFELAAYILQEAKGDFSSNE
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
81.8
0.71
0.8
75.8
32.2
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
66.6
0.6
1.6
79.36
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023557
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032618
6369123 - 6526339
157217