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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64085496_64089772_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64085496 - 64089772
Intron Length:
4277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCGCC
5'SS Class:
major
3'SS Sequence:
TTTTCCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
TTTTCCCCAACA
Flanking Amino Acid:
AAPPFSCSQPDLNCLVENST
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65.5
42
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
79.1
0.65
0.8
74.7
29
Minor 5ss
38.1
-1.3
3.3
52.1
44.7
Minor BPS
68.3
0.57
1.9
84.96
34.3

Associated Gene:

Gene:
IL17RA
Ensembl Gene ID:
ENSAPLG00000012503
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013034
64085379 - 64102800
17422