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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64089798_64091980_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64089798 - 64091980
Intron Length:
2183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
GCTTGCTGGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
CTGCTCTGAATA
Flanking Amino Acid:
QPDLNCLVENSTCIERSWLQ
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
73.9
30.8
Major BPS
69.8
0.49
1
61
37.5
Major PPT
61.7
0.26
1.1
57.3
43.2
Minor 5ss
42.3
-0.8
2.8
54.2
38.3
Minor BPS
54.5
0.14
1.5
60.96
39.5

Associated Gene:

Gene:
IL17RA
Ensembl Gene ID:
ENSAPLG00000012503
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013043
64089233 - 64102800
13568
ENSAPLT00000013040
64089345 - 64102800
13456
ENSAPLT00000013034
64085379 - 64102800
17422