Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64092128_64093337_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

64092128 - 64093337

Intron Length:

1210

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAGGT

5'SS Class:

strong_major

3'SS Sequence:

CCTGTGCCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAAGGAA

U12 Branch Point Sequence:

AAAAGGAAAACT

Flanking Amino Acid:

LRIEWKVATDASIRYLRGAE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

71.6

38.4

Major BPS

43.6

-0.4

1.2

35.5

31.9

Major PPT

72.9

0.52

0.9

65.3

36.2

Minor 5ss

32.3

-2

3.5

44.3

45.4

Minor BPS

33.8

-1.1

2.5

50.2

42.9

Associated Gene:

Gene:

IL17RA

Ensembl Gene ID:

ENSAPLG00000012503

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013040

64089345 - 64102800

13456

ENSAPLT00000013034

64085379 - 64102800

17422

ENSAPLT00000013043

64089233 - 64102800

13568